| Reference | Publication |
|---|---|
| I. Balboni, S. M. Chan, M. Kattah, J. Tenenbaum, A. J. Butte, P. J. Utz. Multiplexed Protein Array Platforms for Analysis of Autoimmune Diseases. Annual Review of Immunology, 24:391–418. 2006 | Publication |
| A. J. Butte, I. S. Kohane. Creation and implications of a phenome-genome network. Nature Biotechnology,24(1):55 - 62. 2006 | Publication |
| C. J. Wolfe, I. S. Kohane, A. J. Butte. Systematic survey reveals general applicability of “guilt-by-association” within gene coexpression networks.. BMC Bioinformatics,6(227)2005 | Publication |
| J. K. Ichikawa, S. B. English, M. C. Wolfgang, R. Jackson, A. J. Butte, S. Lory. Genome-wide analysis of host responses to the Pseudomonas aeruginosa yields synergistic effects. Cellular Microbiology,7(11):1635–1646. 2005 | Publication |
| J. Pollard, A. J. Butte, S. Hoberman, M. Joshi, J. Levy, J. Pappo. A Computational Model to Define the Molecular Causes of Type 2 Diabetes Mellitus. DIABETES TECHNOLOGY & THERAPEUTICS,7(2):323-336. 2005 | Publication |
| Y. Tseng, A. J. Butte, E. Kokkotou, V. K. Yechoor, C. M. Taniguchi, K. M. Kriauciunas, A. M. Cypess, M. Niinobe, K. Yoshikawa, M. E. Patti, C. Kahn. Prediction of preadipocyte differentiation by gene expression reveals role of insulin receptor substrates and necdin. NATURE CELL BIOLOGY,7(6):601-614. 2005 | Publication |
| A. T. Kho, Q. Zhao, Z. Cai, A. J. Butte, J. Y. Kim, S. L. Pomeroy, D. H. Rowitch, I. S. Kohane. Conserved mechanisms across development and tumorigenesis revealed by a mouse development perspective of human cancers. GENES & DEVELOPMENT,18:629-640. 2004 | Publication |
| A. B. Csoka, S. B. English, C. P. Simkevich, D. G. Ginzinger, A. J. Butte, G. P. Schatten, F. G. Rothman, J. M. Sedivy. Genome-scale expression profiling of Hutchinson–Gilford progeria syndrome reveals widespread transcriptional misregulation leading to mesodermal/mesenchymal defects and accelerated atherosclerosis. Aging Cell,:1-9. 2004 | Publication |
| D. J. Allocco, I. S. Kohane, A. J. Butte. Quantifying the relationship between co-expression, co-regulation and gene function. BMC Bioinformatics,5(18)2004 | Publication |
| D. L. Weiner, A. J. Butte, P. L. Hibberd, G. R. Fleisher. Computerized Recruiting for Clinical Trials in Real Time. ANNALS OF EMERGENCY MEDICINE,41(2):242-246. 2003 | Publication |
| M. E. Patti, A. J. Butte, S. Crunkhorn, K. Cusi, R. Berria, S. Kashyap, Y. Miyazaki, I. S. Kohane, M. Costello, R. Saccone, E. J. Landaker, A. B. Goldfine, E. Mun, R. DeFronzo, J. Finlayson, C. Kahn, L. J. Mandarino. Coordinated reduction of genes of oxidative metabolism in humans with insulin resistance and diabetes: Potential role of PGC1 and NRF1. Proceedings of the National Academy of Sciences,(PNAS), 100(14):8466–8471. 2003 | Publication |
| A. Nimgaonkar, D. Sanoudou, A. J. Butte, J. N. Haslett, H. M. Kunkel, A. H. Beggs, I. S. Kohane. Reproducibility of gene expression across generations of Affymetrix microarrays. BMC Bioinformatics,4:1-12. 2003 | Publication |
| K. Y. Lee, I. S. Kohane, A. J. Butte. PGAGENE: integrating quantitative gene-specific results from the NHLBI Programs for Genomic Applications. BIOINFORMATICS APPLICATIONS NOTE,19(6):778-779. 2003 | Publication |
| A. J. Butte. Automated Assessments in Health Care Quality. Improving the Quality of Primary Care,32:50-62. 2002 | Publication |
| P. J. Park, A. J. Butte, I. S. Kohane. Comparing expression profiles of genes with similar promoter regions. BIOINFORMATICS,18(12):1576–1584. 2002 | Publication |
| W. P. Kuo, T. Jenssen, A. J. Butte, L. Ohno-Machado, I. S. Kohane. Analysis of matched mRNA measurements from two different microarray technologies. BIOINFORMATICS,0(0):1-9. 2002 | Publication |
| A. J. Butte, L. Bao, B. Y. Reis, T. W. Watkins, I. S. Kohane. Comparing the Similarity of Time-Series Gene Expression Using Signal Processing Metrics. Journal of Biomedical Informatics,34:396-405. 2002 | Publication |
| A. J. Butte. THE USE AND ANALYSIS OF MICROARRAY DATA. Nature Reviews: Drug Discovery,1:951-960. 2002 | Publication |
| A. Riva, K. D. Mandl, D. Oh, D. J. Nigrin, A. J. Butte, P. Szolovits, I. S. Kohane. The Personal Internetworked Notary and Guardian. International Journal of Medical Informatics,60:27-40. 2001 | Publication |
| B. Y. Reis, A. J. Butte, I. S. Kohane. Extracting Knowledge from Dynamics in Gene Expression. Journal of Biomedical Informatics,34:15-27. 2001 | Publication |
| A. J. Butte. Challenges in bioinformatics: infrastructure, models and analytics. TRENDS in Biotechnology,19(5):159-160. 2001 | Publication |
| A. J. Butte, J. YE, G. NIEDERFELLNER, K. RETT, H. U. HÄRING, M. F. WHITE, I. S. Kohane. DETERMINING SIGNIFICANT FOLD DIFFERENCES IN GENE EXPRESSION ANALYSIS. 2001. | Publication |
| A. J. Butte, J. S. Shaw, H. Bernstein. Strict interpretation of vaccination guidelines with computerized algorithms and improper timing of administered doses. THE PEDIATRIC INFECTIOUS DISEASE JOURNAL,20(6):561-565. 2001 | Publication |
| A. J. Butte, V. J. Dzau, S. B. Glueck. Further defining housekeeping, or “maintenance,” genes Focus on “A compendium of gene expression in normal human tissues”. Physiol Genomics,7:95-96. 2001 | Publication |
| S. A. Huang, H. M. Tu, J. W. Harney, M. Venihaki, A. J. Butte, H. P. Kozakewich, S. J. Fishman, P. Re. Larson. SEVERE HYPOTHYROIDISM CAUSED BY TYPE 3 IODOTHYRONINE DEIODINASE IN INFANTILE HEMANGIOMAS. The New England Journal of Medicine,343(3):185-189. 2000 | Publication |
| A. J. Butte, I. S. Kohane. MUTUAL INFORMATION RELEVANCE NETWORKS: FUNCTIONAL GENOMIC CLUSTERING USING PAIRWISE ENTROPY MEASUREMENTS. 2000. | Publication |
| A. J. Butte, P. Tamayo, D. Slonim, T. R. Golub, I. S. Kohane. Discovering functional relationships between RNA expression and chemotherapeutic susceptibility using relevance networks. 2000. | Publication |
| A. J. Butte, D. A. Weinstein, I. S. Kohane. Enrolling Patients Into Clinical Trials Faster Using RealTime Recuiting. 2000. | Publication |
| A. J. Butte, I. S. Kohane. Unsupervised Knowledge Discovery in Medical Databases Using Relevance Networks. 1999. | Publication |
| M. J. Quon, M. Guerre-Millo, M. Zarnowski, A. J. Butte, M. Em, S. W. Cushman, S. I. Taylor. Tyrosine kinase-deficient mutant human insulin receptors (Met1153–>Ile) overexpressed in transfected rat adipose cells fail to mediate translocation of epitope-tagged GLUT4. Proc Natl Acad Sci U S A.,91(12):5587-5591. 1994 | Publication |
| M. J. Quon, A. J. Butte, M. Zarnowski, G. Sesti, S. W. Cushman, S. I. Taylor. Insulin Receptor Substrate 1 Mediates the Stimulatory Effect of Insulin on GLUT4 Translocation in Transfected Rat Adipose Cells. THE JOURNAL OF BIOLOGICAL CHEMISTRY,269(45):27920-27924. 1994 | Publication |
| P. B. DePetrillo, A. J. Butte. Derivation of Scale-Independent Parameter Which Characterizes Genetic Sequence Comparisons. Computers and Biomedical Research: An International Journal,26(6):517-540. 1993 | Publication |
| B. Rotman, A. J. Butte. A Computer-Simulated “Wet Laboratory”. Biochemical Education,20(3):139-141. 1992 | Publication |